SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
WHERE 
  cscart_products_categories.product_id IN (
    638, 639, 980, 981, 982, 983, 984, 985, 
    986, 987, 988, 990, 991, 992, 993, 994, 
    995, 996, 997, 998, 999, 1000, 1001, 
    1002, 1003, 1004, 1005, 1006, 1007, 
    1008, 1009, 1010, 1011
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00122

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "108.72"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "cost_info": {
        "sort_cost": "4.63"
      },
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "ALL",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "rows_examined_per_scan": 125,
            "rows_produced_per_join": 5,
            "filtered": "4.00",
            "cost_info": {
              "read_cost": "29.49",
              "eval_cost": "1.00",
              "prefix_cost": "30.49",
              "data_read_per_join": "20K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`cscart`.`cscart_categories`.`storefront_id` in (0,1)) and ((`cscart`.`cscart_categories`.`usergroup_ids` = '') or find_in_set(0,`cscart`.`cscart_categories`.`usergroup_ids`) or find_in_set(1,`cscart`.`cscart_categories`.`usergroup_ids`)) and (`cscart`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "cscart.cscart_categories.category_id"
            ],
            "rows_examined_per_scan": 12,
            "rows_produced_per_join": 4,
            "filtered": "7.71",
            "index_condition": "(`cscart`.`cscart_products_categories`.`product_id` in (638,639,980,981,982,983,984,985,986,987,988,990,991,992,993,994,995,996,997,998,999,1000,1001,1002,1003,1004,1005,1006,1007,1008,1009,1010,1011))",
            "cost_info": {
              "read_cost": "61.60",
              "eval_cost": "0.93",
              "prefix_cost": "104.09",
              "data_read_per_join": "74"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids
638 309M,365,363
639 309M,365,363
980 309,364M,363
981 309,364M,363
982 309,364M,363
983 363,309,364M
984 309,364M,363
985 309,364M,363
986 309,364M,363
987 309,364M,363
988 309,364M,363
990 363,309,364M
991 309,364M,363
992 309,363,365M
993 309,363,365M
994 309,363,365M
995 309,363,365M
996 365M,309,363
997 363,365M,309
998 309,363,365M
999 309,363,365M
1000 309,363,365M
1001 309,363,365M
1002 365M,309,363
1003 363,365M,309
1004 309,363,365M
1005 309,363,365M
1006 309,363,365M
1007 309,363,365M
1008 309,363,365M
1009 365M,309,363
1010 363,365M,309
1011 309,363,365M