SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
WHERE 
  cscart_products_categories.product_id IN (
    1016, 1017, 622, 638, 639, 980, 981, 982, 
    983, 984, 997, 998, 999, 1000, 1001, 
    1002, 1003, 1004, 1005, 1006, 1007, 
    1008, 1009, 1010, 1011, 1030, 621, 1029
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00110

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "109.65"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "cost_info": {
        "sort_cost": "3.93"
      },
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "ALL",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "rows_examined_per_scan": 126,
            "rows_produced_per_join": 5,
            "filtered": "4.00",
            "cost_info": {
              "read_cost": "29.72",
              "eval_cost": "1.01",
              "prefix_cost": "30.73",
              "data_read_per_join": "20K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`cscart`.`cscart_categories`.`storefront_id` in (0,1)) and ((`cscart`.`cscart_categories`.`usergroup_ids` = '') or find_in_set(0,`cscart`.`cscart_categories`.`usergroup_ids`) or find_in_set(1,`cscart`.`cscart_categories`.`usergroup_ids`)) and (`cscart`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "cscart.cscart_categories.category_id"
            ],
            "rows_examined_per_scan": 12,
            "rows_produced_per_join": 3,
            "filtered": "6.49",
            "index_condition": "(`cscart`.`cscart_products_categories`.`product_id` in (1016,1017,622,638,639,980,981,982,983,984,997,998,999,1000,1001,1002,1003,1004,1005,1006,1007,1008,1009,1010,1011,1030,621,1029))",
            "cost_info": {
              "read_cost": "62.90",
              "eval_cost": "0.79",
              "prefix_cost": "105.72",
              "data_read_per_join": "62"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids
621 355,311M
622 355,309M,311
638 363,365,309M
639 363,365,309M
980 363,364M,309
981 309,363,364M
982 309,363,364M
983 309,363,364M
984 364M,309,363
997 363,365M,309
998 363,365M,309
999 363,365M,309
1000 365M,309,363
1001 365M,309,363
1002 365M,309,363
1003 363,365M,309
1004 363,365M,309
1005 363,365M,309
1006 309,363,365M
1007 365M,309,363
1008 365M,309,363
1009 365M,309,363
1010 363,365M,309
1011 363,365M,309
1016 345,357M,309
1017 309,345,357M
1029 355,311M
1030 309M,355,311